SampleResult is a very simple Java class, known as a POJO (Plain Old Java Object), which consists of nothing but public fields. RINspector Combines centrality analyses of Residue Interaction Networks (RIN) with DynaMine flexibility predictions C圜ommunityDetection Integrates multiscale community detection and functional enrichment for network analysis. It provides a JSON String via its getJSON() method by transforming the contents of an instance of SampleResult into JSON. A Cytoscape app to connect to a Neo4j database and execute extensions of the Neo4j database. SampleJSONResult is responsible for providing our command’s JSON output. I read the question asked by gcpdev yesterday (Exporting and importing JSON data to Cytoscape.js) here, but it doesnt helped me. I tried to import this cyjs file to a web application using Cytoscape.js library but I failed. This sample app implements JSONResult with a class called SampleJSONResult and then returns SampleJSONResult from the task ReturnJSONTask. I exported a protein-protien network from Cytoscape 3.1 BETA 3 using the built-in exporter to a JSON (cyjs) file. Share answered at 3:20 maxkfranz 11. Just point Cytoscape.js to the particular parts of the JSON you want to use (when you call cytoscape ( myOptions ). This is done via returning implementations of the .JSONResult interface. 1 Cytoscape desktop erroneously names the exported file with the extension. JSON output form Commands can be accessed via CyREST, which first needs to know that a Task is capable of providing it, and then needs a means to access it. As a guideline, any JSON produced should be compatible with both R (using JSONIO) and python (using pandas). The is discussed in detail in the Producing Output from Tasks section of the TaskFactory Sample App. The implementation of this interface should be included as part of a core app, to allow updates to the schemas outside of the regular Cytoscape release cycle. It is recommended to be familiar with concepts in Cytoscape 3.0 App Development, as well as the Cytoscape Automation TaskFactory Sample App Producting JSON Output from TasksĬommands implementing the ObservableTask method can return various classes of object after completing via the R getResults(Class type) method. When added to the OSGi context, this TaskFactory can then be executed outside of Cytoscape through REST, and it’s JSON result can be extracted. Implementing JSONResult SampleJSONResult is responsible for providing our command’s JSON output. This sample app implements JSONResult with a class called SampleJSONResult and then returns SampleJSONResult from the task ReturnJSONTask. This sample creates a TaskFactory instance that provides JSON results. This is done via returning implementations of the .JSONResult interface. Cytoscape-automation TaskFactory JSON Result Sample
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